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SPIRES-BOOKS: FIND KEYWORD COMPUTATIONAL BIOLOGY/BIOINFORMATICS *END*INIT* use /tmp/qspiwww.webspi1/11845.62 QRY 131.225.70.96 . find keyword computational biology/bioinformatics ( in books using www Cover
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Call number:9783319458090:ONLINE Show nearby items on shelf
Title:Statistical Analysis of Proteomics, Metabolomics, and Lipidomics Data Using Mass Spectrometry
Author(s):
Date:2017
Size:1 online resource (VIII, 295 p. 106 illus., 83 illus. in color p.)
Contents:Transformation, normalization and batch effect in the analysis of mass spectrometry data for omics studies -- Automated Alignment of Mass Spectrometry Data Using Functional Geometry -- The analysis of peptide-centric mass spectrometry
data utilizing information about the expected isotope distribution -- Probabilistic and likelihood-based methods for protein identification from MS/MS data -- An MCMC-MRF Algorithm for Incorporating Spatial Information in IMS Data
Processing -- Mass Spectrometry Analysis Using MALDIquant -- Model-based analysis of quantitative proteomics data with data independent acquisition mass spectrometry -- The analysis of human serum albumin proteoforms using
compositional framework -- Variability Assessment of Label-Free LC-MS Experiments for Difference Detection -- Statistical approach for biomarker discovery using label-free LC-MS data - an overview -- Bayesian posterior integration for
classification of mass spectrometry data -- Logistic regression modeling on mass spectrometry data in proteomics case-control discriminant studies -- Robust and confident predictor selection in metabolomics -- On the combination of
omics data for prediction of binary Outcomes -- Statistical analysis of lipidomics data in a case-control study
ISBN:9783319458090
Series:eBooks
Series:Springer eBooks
Series:Springer 2017 package
Keywords: Statistics , Analytical chemistry , Mathematical statistics , Bioinformatics , Biostatistics , Metabolism , Statistics , Statistics for Life Sciences, Medicine, Health Sciences , Biostatistics , Metabolomics , Computational Biology/Bioinformatics , Analytical Chemistry , Probability and Statistics in Computer Science
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Call number:0471784095:ONLINE Show nearby items on shelf
Title:Grid Computing for Bioinformatics and Computational Biology
Author(s): Talbi
Date:2007
Publisher:Wiley-Interscience
Size:1 online resource (393 p.)
ISBN:9780471784098
Series:eBooks
Series:Wiley Online Library
Series:Wiley 2016 package purchase
Keywords: General Computing
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Call number:0471718483:ONLINE Show nearby items on shelf
Title:Parallel Computing for Bioinformatics and Computational Biology, Online Version
Author(s): Zomaya
Date:2006
Publisher:Wiley-Interscience
Size:1 online resource (817 p.)
ISBN:9780471718482
Series:eBooks
Series:Wiley Online Library
Series:Wiley 2016 package purchase
Keywords: General Computing
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Call number:SPRINGER-2016-9783658132347:ONLINE Show nearby items on shelf
Title:Analysis of Single-Cell Data ODE Constrained Mixture Modeling and Approximate Bayesian Computation
Author(s): Carolin Loos
Date:2016
Edition:1st ed. 2016
Size:1 online resource (92 p.)
Note:10.1007/978-3-658-13234-7
Contents:Modeling and Parameter Estimation for Single-Cell Data -- ODE Constrained Mixture Modeling for Multivariate Data -- Approximate Bayesian Computation Using Multivariate Statistics
ISBN:9783658132347
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Mathematics , Bioinformatics , Computational biology , Computer mathematics , Biomathematics , Mathematics , Mathematical and Computational Biology , Computational Mathematics and Numerical Analysis , Computer Appl. in Life Sciences
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Call number:SPRINGER-2016-9783319412139:ONLINE Show nearby items on shelf
Title:The Statistical Physics of Fixation and Equilibration in Individual-Based Models
Author(s): Peter Ashcroft
Date:2016
Size:1 online resource (13 p.)
Note:10.1007/978-3-319-41213-9
Contents:Introduction -- Technical Background -- Finite Populations in Switching Environments -- Fixation Time Distribution -- Metastable States in Cancer Initiation -- The WKB Method: A User-guide -- Conclusions
ISBN:9783319412139
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Physics , Cancer research , Bioinformatics , Game theory , Probabilities , Biomathematics , Sociophysics , Econophysics , Physics , Socio- and Econophysics, Population and Evolutionary Models , Mathematical and Computational Biology , Bioinformatics , Probability Theory and Stochastic Processes , Game Theory, Economics, Social and Behav. Sciences , Cancer Research
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Call number:SPRINGER-2016-9783319288932:ONLINE Show nearby items on shelf
Title:Data-driven Modelling of Structured Populations A Practical Guide to the Integral Projection Model
Author(s): Stephen P Ellner
Date:2016
Size:1 online resource (29 p.)
Note:10.1007/978-3-319-28893-2
Contents:Introduction -- Simple Deterministic IPM -- Basic Analysis 1: Demographic Measures and Events in the Life Cycle -- Basic Analysis 2: Prospective Perturbation Analysis -- Density Dependence -- General Deterministic IPM -- Environmental Stochasticity -- Spatial Models -- Evolutionary Demography -- Future Directions and Advanced Topics
ISBN:9783319288932
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Mathematics , Bioinformatics , Computational biology , Biomathematics , Mathematics , Mathematical and Computational Biology , Computer Appl. in Life Sciences
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Call number:SPRINGER-2016-9783319285887:ONLINE Show nearby items on shelf
Title:Computational Diffusion MRI MICCAI Workshop, Munich, Germany, October 9th, 2015
Author(s):
Date:2016
Size:1 online resource (63 p.)
Note:10.1007/978-3-319-28588-7
Contents:An Efficient Finite Element Solution of the Generalised Bloch-Torrey Equation for Arbitrary Domains: L. Beltrachini et al -- Super-Resolution Reconstruction of Diffusion-Weighted Images using 4D Low-Rank and Total Variation: Feng Shi et al -- Holist ic Image Reconstruction for Diffusion MRI: V. Golkov et al -- Alzheimer’s Disease Classification with Novel Microstructural Metrics from Diffusion-Weighted MRI: T. M. Nir et al -- Brain Tissue Micro-Structure Imaging from Diffusion MRI Using Least Squar es Variable Separation: H. Farooq et al -- Multi-Tensor MAPMRI: How to Estimate Microstructural Information from Crossing Fibers: M. Zucchelli et al -- On the Use of Antipodal Optimal Dimensionality Sampling Scheme on the Sphere for Recovering Intra-Voxel Fibre Structure in Diffusion MRI: A.P. Bates et al -- Estimation of Fiber Orientations Using Neighborhood Information: C. Ye et al -- A framework for creating population specific multimodal brain atlas using clinical T1 and diffusion tensor
images: V. Gupta et al -- Alignment of Tractograms as Linear Assignment Problem: N. Sharmin -- Accelerating Global Tractography Using Parallel Markov Chain Monte Carlo: H. Wu et al -- Adaptive Enhancement in Diffusion MRI Through Propagator Sharpeni ng: T. Dela Haije et al -- Angular Resolution Enhancement of Diffusion MRI Data Using Inter-Image Information Transfer: Geng Chen et al -- Crossing versus Fanning: Model Comparison Using HCP Data: A. Ghosh et al -- White Matter Fiber Set Simplification by Redundancy Reduction with Minimum Anatomical Information Loss: G. Zimmerman Moreno et al -- A Temperature Phantom to Probe the Ensemble Average Propagator Asymmetry: an In-Silico Study: M. Pizzolato et al -- Registration Strategies for Whole-Body Diffusi on-Weighted MRI Stitching: J. Ceranka et al -- HARDI Feature Selection, Registration and Atlas Building for A$\beta$ Pathology Classification: E. Schwab et al -- Reliability of Structural Connectivity Examined with Four Different Diffusion
Reconstruction Methods at Two Different Spatial and Angular Resolutions: J. E. Villalon-Reina et al
ISBN:9783319285887
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Mathematics , Computer simulation , Image processing , Bioinformatics , Computer mathematics , Visualization , Statistics , Mathematics , Visualization , Computational Biology/Bioinformatics , Computational Science and Engineering , Simulation and Modeling , Image Processing and Computer Vision , Statistics for Life Sciences, Medicine, Health Sciences
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Call number:SPRINGER-2016-9783319244488:ONLINE Show nearby items on shelf
Title:Physical Models of Cell Motility
Author(s):
Date:2016
Edition:1st ed. 2016
Size:1 online resource (9 p.)
Note:10.1007/978-3-319-24448-8
Contents:Introduction -- Phase-field Description of Cell Movement -- Role of Substrate Adhesiveness -- Cytoskeletal Waves -- Chemical Signaling -- Efficiency of Cell Motion
ISBN:9783319244488
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Physics , Bioinformatics , Computational biology , Biomathematics , Biophysics , Biological physics , Biomedical engineering , Physics , Biophysics and Biological Physics , Biomedical Engineering , Computer Appl. in Life Sciences , Numerical and Computational Physics , Physiological, Cellular and Medical Topics
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Call number:SPRINGER-2014-9781461495215:ONLINE Show nearby items on shelf
Title:Computational Methods for Three-Dimensional Microscopy Reconstruction [electronic resource]
Author(s): Gabor T Herman
Joachim Frank
Date:2014
Publisher:New York, NY : Springer New York : Imprint: Birkhuser
Size:1 online resource
Note:Approaches to the recovery of three-dimensional information on a biological object, which are often formulated or implemented initially in an intuitive way, are concisely described here based on physical models of the object andthe image-formation pr ocess. Both three-dimensional electron microscopy and X-ray tomography can be captured in the same mathematical framework, leading to closely-related computational approaches, but the methodologies differ indetail and hence pose different challenges. The editors of this volume, Gabor T. Herman and Joachim Frank, are experts in the respective methodologies and present research at the forefront of biological imaging and structural biology. Computational Methods for Three-Dimensional Microscopy Reconstructio n will serve as a useful resource for scholars interested in the development of computational methods for structural biology and cell biology, particularly in thearea of 3D imaging and modeling
Contents:1 Introduction
2 Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
3 Fully automated particle selection and verification in single
particle cryo
EM
4 Quantitative analysis in iterative classification schemes for cryo
EM applications
5 High
resolution cryo
EM structure of the Trypanosoma brucei ribosome of a case study
6 Computational methods for electron tomography of influenza virus
7 Reconstruction from microscopic projections with defocus
gradient and attenuation effects
8 Soft X
ray tomography imaging for biological sampl
ISBN:9781461495215
Series:eBooks
Series:SpringerLink
Series:Applied and Numerical Harmonic Analysis, 2296-5009
Series:Mathematics and Statistics (Springer-11649)
Keywords: Mathematics , Bioinformatics , Physiology Mathematics , Visualization , Cell aggregation Mathematics
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Call number:SPRINGER-2012-9781461421450:ONLINE Show nearby items on shelf
Title:Computational Modeling of Biological Systems [electronic resource]
Author(s): Nikolay V Dokholyan
Date:2012
Publisher:Springer US
Size:1 online resource
Note:Monograph
Note:Springer 2012 Physics and Astronomy eBook collection
Note:Springer e-book platform
ISBN:9781461421450
Series:Biological and Medical Physics, Biomedical Engineering
Series:e-books
Keywords: Biophysics and Biological Physics , Molecular Medicine , Mathematical and Computational Biology , Computational Biology/Bioinformatics
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Call number:SPRINGER-2012-9781461417439:ONLINE Show nearby items on shelf
Title:Analysis of Phylogenetics and Evolution with R [electronic resource]
Author(s): Emmanuel Paradis
Date:2012
Publisher:New York, NY : Springer New York
Size:1 online resource
Note:Springer e-book platform
Note:Springer 2013 e-book collections
Note:The increasing availability of molecular and genetic databases coupled with the growing power of computers gives biologists opportunities to address new issues, such as the patterns of molecular evolution, and re-assess old ones,such as the role of a daptation in species diversification. In the second edition, the book continues to integrate a wide variety of data analysis methods into a single and flexible interface: the R language. This open source languageis available for a wide range of computer s ystems and has been adopted as a computational environment by many authors of statistical software. Adopting R as a main tool for phylogenetic analyses will ease the workflow in biologists'data analyses, ensure greater scientific repeatability, and enhanc e the exchange of ideas and methodological developments. The second edition is completely updated, covering the full gamut of R packages for this area that have beenintroduced to the market since its previous publication five years ago. There is also a ne w chapter on the simulation of evolutionary data. Graduate students and researchers in evolutionary biology can use this book as areference for data analyses, whereas researchers in bioinformatics interested in evolutionary analyses will learn how to impl ement these methods in R. The book starts with a presentation of different R packages and gives a shortintroduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered: manipulation of phylogenetic data, phyl ogeny estimation, tree drawing, phylogenetic comparative methods, and estimation ofancestral characters. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devotedto the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chap
Note:Springer eBooks
Contents:Introduction
First Steps in R for Phylogeneticists
Phylogenetic Data in R
Plotting Phylogenies
Phylogeny Estimation
Analysis of Macroevolution with Phylogenies
Simulating Phylogenies and Evolutionary Data
Developing and Implementing Phylogenetic Methods in R
Short Course on Regular Expressions
ISBN:9781461417439
Series:e-books
Series:SpringerLink (Online service)
Series:Use R!
Series:Mathematics and Statistics (Springer-11649)
Keywords: Life sciences , Bioinformatics , Evolution (Biology) , Statistics
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Call number:SPRINGER-2011-9780817647896:ONLINE Show nearby items on shelf
Title:Structural Analysis of Complex Networks [electronic resource]
Author(s): Matthias Dehmer
Date:2011
Publisher:Boston : Birkhuser Boston
Size:1 online resource
Note:Springer e-book platform
Note:Springer 2013 e-book collections
Note:Because of the increasing complexity and growth of real-world networks, their analysis by using classical graph-theoretic methods is oftentimes a difficult procedure. As a result, there is a strong need to combine graph-theoreticmethods with mathemat ical techniques from other scientific disciplines, such as machine learning and information theory, in order to analyze complex networks more adequately. Filling a gap in literature, this self-contained bookpresents theoretical and application-oriented re sults to structurally explore complex networks. The work focuses not only on classical graph-theoretic methods, but also demonstrates the usefulness of structural graph theory as a toolfor solving interdisciplinary problems. Special emphasis is given to m ethods related to the following areas: * Applications to biology, chemistry, linguistics, and data analysis * Graph colorings * Graph polynomials * Informationmeasures for graphs * Metrical properties of graphs * Partitions and decompositions * Quantitati ve graph measures Structural Analysis of Complex Networks is suitable for a broad, interdisciplinary readership of researchers,practitioners, and graduate students in discrete mathematics, statistics, computer science, machine learning, artificial intelli gence, computational and systems biology, cognitive science, computational linguistics, and mathematicalchemistry. The book may be used as a supplementary textbook in graduate-level seminars on structural graph analysis, complex networks, or network-based machine learning methods
Note:Springer eBooks
Contents:Preface
A Brief Introduction to Complex Networks and Their Analysis
Partitions of Graphs
Distance in Graphs
Domination in Graphs
Spectrum and Entropy for Infinite Directed Graphs
Application of Infinite Labeled Graphs to Symbolic Dynamical Systems
Decompositions and Factorizations of Complete Graphs
Geodetic Sets in Graphs
Graph Polynomials and Their Applications I: The Tutte Polynomial
Graph Polynomials and Their Applications II: Interrelations and Interpretations
Reconstruction Problems for Graphs, Krawtchouk Polynomials, and Diophantine Equations
Subgraph
ISBN:9780817647896
Series:e-books
Series:SpringerLink (Online service)
Series:Mathematics and Statistics (Springer-11649)
Keywords: Mathematics , Computer Communication Networks , Computational complexity , Data mining , Bioinformatics , Combinatorics
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Call number:SPRINGER-2009-9789048123391:ONLINE Show nearby items on shelf
Title:From Molecules to Medicines [electronic resource] : Structure of Biological Macromolecules and Its Relevance in Combating New Diseases and Bioterrorism
Author(s): Joel L Sussman
Paola Spadon
Date:2009
Publisher:Dordrecht : Springer Netherlands
Size:1 online resource
Note:Springer e-book platform
Note:Springer 2013 e-book collections
Note:The synergism played by crystallography and drug discovery is the central focus of this volume which comprises papers presented at the 40th Erice Course held from 28 May to 8 June 2008. A key theme throughout the book is thedependence of modern struc tural science on multiple experimental and computational techniques, and it is the development of these techniques and their integration that will take us forward in the future
Note:Springer eBooks
Contents:Preface. List of Contributors. Surface Proteins of Gram
Positive Pathogens: Using Crystallography to Uncover Novel Features in Drug and Vaccine Candidates
The Rapid Crystallization Strategy for Structure
Based Inhibitor Design
Fragment
Based Drug Discovery in Academia: Experiences from a Tuberculosis Programme
Structural Biology Contributions to the Discovery of Drugs to Treat Chronic Myelogenous Leukemia
Integrating Crystallography Into Early Metabolism Studies
The Foundations of Protein
Ligand Interaction
Structure
Based Design of TRNA
Guanine Transglycosylase Inhibitors
ISBN:9789048123391
Series:e-books
Series:SpringerLink (Online service)
Series:NATO Science for Peace and Security Series A: Chemistry and Biology, 1874-6489
Series:Physics and Astronomy (Springer-11651)
Keywords: Computer simulation , Biochemistry , RNA-ligand interactions , Bioinformatics , Crystallography
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Call number:SPRINGER-2009-9781848009981:ONLINE Show nearby items on shelf
Title:Digraphs [electronic resource] : Theory, Algorithms and Applications
Author(s): Jrgen Bang-Jensen
Gregory Z Gutin
Date:2009
Publisher:London : Springer London
Size:1 online resource
Note:Springer e-book platform
Note:Springer 2013 e-book collections
Note:The theory of directed graphs has developed enormously over recent decades, yet this book (first published in 2000) remains the only book to cover more than a small fraction of the results. New research in the field has made asecond edition a necessi ty. Substantially revised, reorganised and updated, the book now comprises eighteen chapters, carefully arranged in a straightforward and logical manner, with many new results and open problems. As well ascovering the theoretical aspects of the subject, w ith detailed proofs of many important results, the authors present a number of algorithms, and whole chapters are devoted to topics such as branchings, feedback arc and vertex sets,connectivity augmentations, sparse subdigraphs with prescribed connectivit y, and also packing, covering and decompositions of digraphs. Throughout the book, there is a strong focus on applications which include quantum mechanics,bioinformatics, embedded computing, and the travelling salesman problem. Detailed indices and topic- oriented chapters ease navigation, and more than 650 exercises, 170 figures and 150 open problems are included to help immerse thereader in all aspects of the subject. Digraphs is an essential, comprehensive reference for undergraduate and graduate studen ts, and researchers in mathematics, operations research and computer science. It will also prove invaluable tospecialists in related areas, such as meteorology, physics and computational biology. Jrgen Bang-Jensen is a Professor in the Department of Mathe matics and Computer Science at the University of Southern Denmark, Odense, Denmark.Gregory Gutin is Professor of Computer Science at Royal Holloway College, University of London, UK
Note:Springer eBooks
Contents:Basic Terminology, Notation and Results
Classes of Digraphs
Distances
Flows in Networks
Connectivity of Digraphs
Hamiltonian, Longest and Vertex
Cheapest Paths and Cycles
Restricted Hamiltonian Paths and Cycles
Paths and Cycles of Prescribed Lengths
Branchings
Linkages in Digraphs
Orientations of Graphs and Digraphs
Sparse Subdigraphs with Prescribed Connectivity
Packings, Coverings and Decompositions
Increasing Connectivity
Feedback Sets and Vertex Orderings
Generalizations of Digraphs: Edge
Coloured Multigraphs
Applications of Digraphs and Edge
ISBN:9781848009981
Series:e-books
Series:SpringerLink (Online service)
Series:Springer Monographs in Mathematics, 1439-7382
Series:Mathematics and Statistics (Springer-11649)
Keywords: Mathematics , Computer software , Algorithms , Combinatorics , Mathematical optimization
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Call number:SPRINGER-2008-9780387790541:ONLINE Show nearby items on shelf
Title:Introductory Statistics with R [electronic resource]
Author(s): Peter Dalgaard
Date:2008
Publisher:New York, NY : Springer New York
Size:1 online resource
Note:Springer e-book platform
Note:Springer 2013 e-book collections
Note:R is an Open Source implementation of the S language. It works on multiple computing platforms and can be freely downloaded. R is now in widespread use for teaching at many levels as well as for practical data analysis andmethodological development. This book provides an elementary-level introduction to R, targeting both non-statistician scientists in various fields and students of statistics. The main mode of presentation is via code examples withliberal commenting of the code and the output, from t he computational as well as the statistical viewpoint. A supplementary R package can be downloaded and contains the data sets. The statistical methodology includes statisticalstandard distributions, one- and two-sample tests with continuous data, regressi on analysis, one- and two-way analysis of variance, regression analysis, analysis of tabular data, and sample size calculations. In addition, the last sixchapters contain introductions to multiple linear regression analysis, linear models in general, logi stic regression, survival analysis, Poisson regression, and nonlinear regression. In the second edition, the text and code have beenupdated to R version 2.6.2. The last two methodological chapters are new, as is a chapter on advanced data handling. The in troductory chapter has been extended and reorganized as two chapters. Exercises have been revised and answersare now provided in an Appendix. Peter Dalgaard is associate professor at the Department of Biostatistics at the University of Copenhagen and has extensive experience in teaching within the PhD curriculum at the Faculty of HealthSciences. He has been a member of the R Core Team since 1997
Note:Springer eBooks
ISBN:9780387790541
Series:e-books
Series:SpringerLink (Online service)
Series:Statistics and Computing, 1431-8784
Series:Mathematics and Statistics (Springer-11649)
Keywords: Statistics , Bioinformatics , Biology Data processing , Mathematical statistics
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Call number:SPRINGER-2008-9780387772400:ONLINE Show nearby items on shelf
Title:Bioconductor Case Studies [electronic resource]
Author(s): Florian Hahne
Wolfgang Huber
Robert Gentleman
Seth Falcon
Date:2008
Edition:1
Publisher:New York, NY : Springer New York
Size:1 online resource
Note:Springer e-book platform
Note:Springer 2013 e-book collections
Note:Bioconductor software has become a standard tool for the analysis and comprehension of data from high-throughput genomics experiments. Its application spans a broad field of technologies used in contemporary molecular biology. Inthis volume, the auth ors present a collection of cases to apply Bioconductor tools in the analysis of microarray gene expression data. Topics covered include * import and preprocessing of data from various sources * statisticalmodeling of differential gene expression * biolog ical metadata * application of graphs and graph rendering * machine learning for clustering and classification problems * gene set enrichment analysis Each chapter of this book describesan analysis of real data using hands-on example driven approaches. Sh ort exercises help in the learning process and invite more advanced considerations of key topics. The book is a dynamic document. All the code shown can be executedon a local computer, and readers are able to reproduce every computation, figure, and table . The authors of this book have longtime experience in teaching introductory and advanced courses to the application of Bioconductor software.Florian Hahne is a Postdoc at the Fred Hutchinson Cancer Research Center in Seattle, developing novel methodologi es for the analysis of high-throughput cell-biological data. Wolfgang Huber is a research group leader in the EuropeanMolecular Biology Laboratory at the European Bioinformatics Institute in Cambridge. He has wide-ranging experience in the development of methods for the analysis of functional genomics experiments. Robert Gentleman is Head of theProgram in Computational Biology at the Fred Hutchinson Cancer Research Center in Seattle, and he is one of the two authors of the original R system. Seth Falcon i s a member of the R core team and former project manager and developerfor the Bioconductor project
Note:Springer eBooks
Contents:The ALL Dataset
R and Bioconductor Introduction
Processing Affymetrix Expression Data
Two Color Arrays
Fold Changes, Log Ratios, Background Correction, Shrinkage Estimation, and Variance Stabilization
Easy Differential Expression
Differential Expression
Annotation and Metadata
Supervised Machine Learning
Unsupervised Machine Learning
Using Graphs for Interactome Data
Graph Layout
Gene Set Enrichment Analysis
Hypergeometric Testing Used for Gene Set Enrichment Analysis
Solutions to Exercises
ISBN:9780387772400
Series:e-books
Series:SpringerLink (Online service)
Series:Use R!
Series:Mathematics and Statistics (Springer-11649)
Keywords: Statistics , Bioinformatics , Biology Mathematics
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Call number:SPRINGER-2007-9783540498582:ONLINE Show nearby items on shelf
Title:Topology in Molecular Biology [electronic resource]
Author(s): Michail Ilych Monastyrsky
Date:2007
Publisher:Berlin, Heidelberg : Springer Berlin Heidelberg
Size:1 online resource
Note:Springer e-book platform
Note:Springer 2013 e-book collections
Note:The book presents a class of new results in molecular biology for which topological methods and ideas are important. These include: the large-scale conformation properties of DNA computational methods (Monte Carlo) allowing thesimulation of large-sca le properties of DNA the tangle model of DNA recombination and other applications of Knot theory dynamics of supercoiled DNA and biocatalitic properties of DNA the structure of proteins and other very recentproblems in molecular biology. The text also pro vides a short course of modern topology intended for the broad audience of biologists and physicists. The authors are renowned specialists in their fields and some of the new resultspresented here are documented for the first time in monographic form
Note:Springer eBooks
Contents:1. Introduction
2. Topology in Biology: From DNA Mechanics to Enzymology
3. Monte Carlo Simulation of DNA Topological Properties
4. Dynamics of DNA Supercoiling
5. From Tangle Fractions to DNA
6. Linear Behavior of the Writhe Versus the Number of Crossings in Rational Knots and Links
7. Combinatories and Topology of the
Sandwich and
Barrel Proteins
8. The Structure of Collagen. 9. Euler Charactristic, Dehn
Sommerville Characteristics, and their Applications
10. Hopf Fibration and its Applications
11. Multivalued Functionals, One
forms and Deformed de Rham Compl
ISBN:9783540498582
Series:e-books
Series:SpringerLink (Online service)
Series:Biological and Medical Physics, Biomedical Engineering, 1618-7210
Series:Physics and Astronomy (Springer-11651)
Keywords: Medicine , Bioinformatics
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Call number:SPRINGER-2006-9780387319094:ONLINE Show nearby items on shelf
Title:Evolutionary Computation for Modeling and Optimization [electronic resource]
Author(s): Daniel Ashlock
Date:2006
Publisher:New York, NY : Springer New York
Size:1 online resource
Note:Springer e-book platform
Note:Springer 2013 e-book collections
Note:Evolutionary Computation for Optimization and Modeling is an introduction to evolutionary computation, a field which includes genetic algorithms, evolutionary programming, evolution strategies, and genetic programming. The text isa survey of some app lication of evolutionary algorithms. It introduces mutation, crossover, design issues of selection and replacement methods, the issue of populations size, and the question of design of the fitness function. It alsoincludes a methodological material on eff icient implementation. Some of the other topics in this book include the design of simple evolutionary algorithms, applications to several types of optimization, evolutionary robotics, simpleevolutionary neural computation, and several types of automatic programming including genetic programming. The book gives applications to biology and bioinformatics and introduces a number of tools that can be used in biologicalmodeling, including evolutionary game theory. Advanced techniques such as cellular encoding , grammar based encoding, and graph based evolutionary algorithms are also covered. This book presents a large number of homework problems,projects, and experiments, with a goal of illustrating single aspects of evolutionary computation and comparing diff erent methods. Its readership is intended for an undergraduate or first-year graduate course in evolutionarycomputation for computer science, engineering, or other computational science students. Engineering, computer science, and applied math students wi ll find this book a useful guide to using evolutionary algorithms as a problem solvingtool
Note:Springer eBooks
Contents:An Overview of Evolutionary Computation
Designing Simple Evolutionary Algorithms
Optimizing Real
Valued Functions
Sunburn: Coevolving Strings
Small Neural Nets : Symbots
Evolving Finite State Automata
Ordered Structures
Plus
One
Recall
Store
Fitting to Data
Tartarus: Discrete Robotics
Evolving Logic Functions
ISAc List: Alternative Genetic Programming
Graph
Based Evolutionary Algorithms
Cellular Encoding
Application to Bioinformatics
ISBN:9780387319094
Series:e-books
Series:SpringerLink (Online service)
Series:Mathematics and Statistics (Springer-11649)
Keywords: Mathematics , Artificial intelligence , Bioinformatics , Algorithms
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Call number:SPRINGER-2005-9780387293622:ONLINE Show nearby items on shelf
Title:Bioinformatics and Computational Biology Solutions Using R and Bioconductor [electronic resource]
Author(s): Robert Gentleman
Vincent J Carey
Wolfgang Huber
Rafael A Irizarry
Sandrine Dudoit
Date:2005
Publisher:New York, NY : Springer New York
Size:1 online resource
Note:Springer e-book platform
Note:Springer 2013 e-book collections
Note:Bioconductor is a widely used open source and open development software project for the analysis and comprehension of data arising from high-throughput experimentation in genomics and molecular biology. Bioconductor is rooted inthe open source statis tical computing environment R. This volume's coverage is broad and ranges across most of the key capabilities of the Bioconductor project, including importation and preprocessing of high-throughput data frommicroarray, proteomic, and flow cytometry platfo rms curation and delivery of biological metadata for use in statistical modeling and interpretation statistical analysis of high-throughput data, including machine learning andvisualization, modeling and visualization of graphs and networks. The developer s of the software, who are in many cases leading academic researchers, jointly authored chapters. All methods are illustrated with publicly available data,and a major section of the book is devoted to exposition of fully worked case studies. This book is more than a static collection of descriptive text, figures, and code examples that were run by the authors to produce the text it is adynamic document. Code underlying all of the computations that are shown is made available on a companion website, and re aders can reproduce every number, figure, and table on their own computers. Robert Gentleman is Head of theProgram in Computational Biology at the Fred Hutchinson Cancer Research Center in Seattle. He is one of the two authors of the original R system and a leading member of the R core team. Vincent Carey is Associate Professor of Medicine(Biostatistics), Channing Laboratory, Brigham and Women's Hospital, Harvard Medical School. Gentleman and Carey are co-founders of the Bioconductor project. Wolfgang Hub er is Group Leader in the European Molecular Biology Laboratory atthe European Bioinformatics Institute in Cambridge. He has made influential contributions to the error modeling of microarray data. Raf
Note:Springer eBooks
Contents:Preprocessing data from genomic experiments
Preprocessing Overview
Preprocessing High
density Oligonucleotide Arrays
Quality Assessment of Affymetrix GeneChip Data
Preprocessing Two
Color Spotted Arrays
Cell
Based Assays
SELDI
TOF Mass Spectrometry Protein Data
Meta
data: biological annotation and visualization
Meta
data Resources and Tools in Bioconductor
Querying On
line Resources
Interactive Outputs
Visualizing Data
Statistical analysis for genomic experiments
Analysis Overview
Distance Measures in DNA Microarray Data Analysis
Cluster Analysis of
ISBN:9780387293622
Series:e-books
Series:SpringerLink (Online service)
Series:Statistics for Biology and Health, 1431-8776
Series:Mathematics and Statistics (Springer-11649)
Keywords: Statistics , Bioinformatics , Animal genetics
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Call number:SPRINGER-2004-9783034878951:ONLINE Show nearby items on shelf
Title:Function and Regulation of Cellular Systems
Author(s):
Date:2004
Size:1 online resource (23 p.)
Note:10.1007/978-3-0348-7895-1
Contents:to Part I -- A Functional Dynamics Approach to Modelling of Glycolysis -- Temperature-Compensation in Biological Clocks:Models and Experiments -- Metabolic Control Analysis of the ATPase Network in Contracting Muscle:Regulation of
Contractile Function and ATP Free Energy Potential -- En Route for Systems Biology: In Silico Pathway Analysis and Metabolite Profiling -- to Part II -- Presynaptic Calcium Dynamics of Neurons in Answer to VariousStimulation Protocols
-- Mathematical Modeling of Signaling Cascades: Principles and Future Prospects -- Collective Behavior of Membrane Channels: Electro-physiological Studies on Gap Junctions -- Modelling of Periodic Intercellular Ca2+ Waves -- Travelling
Waves as a Mechanism of Pattern Generation in Discrete Cell Lattices -- Design and Operation: Keys to Understanding Biological Systems -- to Part III -- Biopolymer Dynamics -- Micromechanics of Molecular Motors: Experiments and Theory
-- The Role of Osteocalcin in the Remodeling of Biomimetic Hydroxyapatite-Collagen Materials for Bone Replacement -- Cell Shape Normalization of Normal and Haploinsufficient NF1-Melanocytes by Micro-Structured Substrate Interaction --
Quantification of Shear Stress-Induced Cell Migration in Endothelial Cultures -- to Part IV -- Constructive and Dynamical Systems Approach to Life -- Coherent Dynamics in Networks of Single Protein Molecules -- Gene Regulatory
Networks: A Discrete Model of Dynamics and Topological Evolution -- Evolutionary Reconstruction of Networks -- Modelling Simple Biochemical Networks -- On the Evolution of Information in the Constituents of Regulatory Gene Networks --
to Part V -- Biological Relevance of Tissue Liquidity and Viscoelasticity -- Reinforcement of Cytoskeleton-Matrix Bonds and Tensiotaxis: A Cell-Based Model -- Simulation of Haematopoietic Stem Cell Organisation Using a Single Cell
Based Model Approach -- Pattern Formation in an Interacting Cell System: Rippling in Myxobacterial Aggregates -- to Part VI -- Molecular and Cellular Analysis of De Novo Pattern Formation in Hydra -- The Small Freshwater Polyp Hydra as
a Model for Axis Formationin Higher Organisms -- Cell Migration, Cell Fate and Pattern Formation During Head Development in Lungfishes and Amphibians -- Cell-Based Modelling of Tissues -- to Part VII -- Cell-Based Models of Avascular
Tumor Growth -- Solid Tumor Invasion: The Importance of Cell Adhesion -- Interrelationship of Tumor and Immune System -- Nonlinear Dynamics and Statistical Physics of Models for the Immune System -- Stochastic Model of Influenza Virus
Fusion -- Spatio-Temporal Aspects of a Dynamical Disease: Waves of Spreading Depression -- List of contributors -- Color Plates
ISBN:9783034878951
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Mathematics , Computer simulation , Bioinformatics , Computational biology , System theory , Biomathematics , Mathematics , Mathematical and Computational Biology , Simulation and Modeling , Systems Theory, Control , Computer Appl. in Life Sciences , Physiological, Cellular and Medical Topics
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Call number:SPRINGER-2002-9783642560804:ONLINE Show nearby items on shelf
Title:Computational Methods for Macromolecules: Challenges and Applications Proceedings of the 3rd International Workshop on Algorithms for Macromolecular Modeling, New York, October 12–14, 2000
Author(s):
Date:2002
Size:1 online resource (504 p.)
Note:10.1007/978-3-642-56080-4
Contents:Methods for Macromolecular Modeling (M3): Assessment of Progress and Future Perspectives -- I Biomolecular Dynamics Applications -- Mathematics and Molecular Neurobiology -- Structural and Dynamical Characterization of Nuclei Acid
Water and Ion Binding Sites -- II Molecular Dynamics Methods -- A Test Set for Molecular Dynamics Algorithms -- Internal Coordinate Molecular Dynamics Based on the Spectroscopic B-Matrix -- The Sigma MD Program and a Generic Interface
Applicable to Multi-Functional Programs with Complex, Hierarchical Command Structure -- Overcoming Instabilities in Verlet-I/r-RESPA with the Mollified Impulse Method -- III Monte Carlo Methods -- On the Potential of Monte Carlo
Methods for Simulating Macromolecular Assemblies -- Structure Calculation of Protein Segments Connecting Domains with Defined Secondary Structure: A Simulated Annealing Monte Carlo Combined with Biased Scaled Collective Variables
Technique -- IV Other Conformational Sampling Methods -- Hierarchical Uncoupling-Coupling of Metastable Conformations -- Automatic Identification of Metastable Conformations via Self-Organized Neural Networks -- V Free Energy Methods
-- Equilibrium and Non-Equilibrium Foundations of Free Energy Computational Methods -- Free-Energy Calculations in Protein Folding by Generahzed-Ensemble Algorithms -- Ab Initio QM/MM and Free Energy Calculations of Enzyme Reactions --
VI Long Range Interactions and Fast Electrostatics Methods -- Treecode Algorithms for Computing Nonbonded Particle Interactions -- A New Reciprocal Space Based Method for Treating Long Range Interactions in Ab Initio and Force-Field
Based Calculations for Surfaces, Wires, and Clusters -- Efficient Computational Algorithms for Fast Electrostatics and Molecular Docking -- VII Statistical Approaches to Protein Structures -- Fold Recognition Using the OPLS All-Atom
Potential and the Surface Generalized Born Solvent Model -- Identification of Sequence-Specific Tertiary Packing Motifs in Protein Structures using Delaunay Tessellation -- Appendix: Color Plates
ISBN:9783642560804
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Series:Lecture Notes in Computational Science and Engineering: 24
Keywords: Mathematics , Computer simulation , Biochemistry , Bioinformatics , Computational biology , Computer mathematics , Mathematical models , Physics , Mathematics , Mathematical Modeling and Industrial Mathematics , Biochemistry, general , Simulation and Modeling , Computer Appl. in Life Sciences , Computational Mathematics and Numerical Analysis , Theoretical, Mathematical and Computational Physics
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Call number:SPRINGER-2002-9783540456926:ONLINE Show nearby items on shelf
Title:Biological Evolution and Statistical Physics
Author(s):
Date:2002
Size:1 online resource (342 p.)
Note:10.1007/3-540-45692-9
Contents:Molecular information and evolution -- Statistical significance and extremal ensemble of gapped local hybrid alignment -- On the design of optimization criteria for multiple sequence alignment -- Red queen dynamics and the evolution
of translational redundancy and degeneracy -- A testable genotype-phenotype map: modeling evolution of RNA molecules -- Evolutionary perspectives on protein structure, stability, and functionality -- Phylogeny -- The statistical
approach to molecular phylogeny: Evidence for a nonhyperthermophilic common ancestor -- Principles of cophylogenetic maps -- Accounting for phylogenetic uncertainty in comparative studies of evolution and adaptation -- The‘ shape’ of
phylogenies under simple random speciation models -- The evolution of populations and species -- Fitness landscapes -- Tempo and mode in quasispecies evolution -- Multilevel processes in evolution and development: Computational models
and biological insights -- Evolutionary strategies for solving optimization problems -- Review of biological ageing on the computer -- Spatio-temporal modes of speciation -- Large-scale evolution -- Food web structure and the evolution
of ecological communities -- Dynamics and topology of species networks -- Modelling macroevolutionary patterns: An ecological perspective
ISBN:9783540456926
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Series:Lecture Notes in Physics: 585
Keywords: Life sciences , Bioinformatics , Evolutionary biology , Biomathematics , Biophysics , Biological physics , Statistical physics , Dynamical systems , Life Sciences , Evolutionary Biology , Statistical Physics, Dynamical Systems and Complexity , Biophysics and Biological Physics , Bioinformatics , Mathematical and Computational Biology
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Call number:SPRINGER-2002-9780387226323:ONLINE Show nearby items on shelf
Title:Introductory Statistics with R
Author(s): Peter Dalgaard
Date:2002
Size:1 online resource (267 p.)
Note:10.1007/b97671
Contents:Basics -- Probability and distributions -- Descriptive statistics and graphics -- One- and two-sample tests -- Regression and correlation -- Analysis of variance and the Kruskal-Wallis test -- Tabular data -- Power and the computation
of sample size -- Multiple regression -- Linear models -- Logistic regression -- Survival analysis
ISBN:9780387226323
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Mathematics , Bioinformatics , Computational biology , Probabilities , Statistics , Mathematics , Probability Theory and Stochastic Processes , Statistics and Computing/Statistics Programs , Bioinformatics , Computer Appl. in Life Sciences
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Call number:SPRINGER-2002-9780387216393:ONLINE Show nearby items on shelf
Title:Branching Processes in Biology
Author(s): Marek Kimmel
Date:2002
Size:1 online resource (232 p.)
Note:10.1007/b97371
Contents:Motivating Examples and Other Preliminaries -- Biological Background -- The Galton-Watson Process -- The Age-Dependent Process: The Markov Case -- The Bellman-Harris Process -- Multitype Processes -- Branching Processes with
Infinitely Many Types -- References
ISBN:9780387216393
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Series:Interdisciplinary Applied Mathematics: 19
Keywords: Mathematics , Bioinformatics , Cell biology , Probabilities , Biomathematics , Statistics , Mathematics , Mathematical and Computational Biology , Probability Theory and Stochastic Processes , Statistics for Life Sciences, Medicine, Health Sciences , Bioinformatics , Cell Biology
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Call number:SPRINGER-2001-9781475734669:ONLINE Show nearby items on shelf
Title:Applied Statistics in the Pharmaceutical Industry With Case Studies Using S-Plus
Author(s):
Date:2001
Size:1 online resource (514 p.)
Note:10.1007/978-1-4757-3466-9
Contents:1: Introduction -- 1. Statistics and the Drug Development Process -- 2: Basic Research and Preclinical Studies -- 2. One-Factor Comparative Studies -- 3: Pre-Clinical Safety Assessment -- 3. Analysis of Animal Carcinogenicity Data --
4. Analysis of Toxicokinetic and Pharmacokinetic Data from Animal Studies -- 4: Phase I Studies -- 5. Analysis of Pharmacokinetic Data -- 6. Graphical Presentation of Single Patient Results -- 7. Graphical Insight and Data Analysis for
the 2,2,2 Crossover Design -- 8. Design and Analysis of Phase I Trials in Clinical Oncology -- 9. Patient Compliance and its Impact on Steady State Pharmacokinetics -- 10. Analysis of Analgesic Trials -- 5: Phase II and Phase III
Clinical Trials -- 11. Power and Sample Size Calculations -- 12. Comparing Two Treatments in a Large Phase III Clinical Trial -- 13. Analysis of Variance: A Comparison Between SAS and S-PLUS -- 14. Permutation Tests for Phase III
Clinical Trials -- 15. Sample Size Reestimation -- 16. Meta-Analysis of Clinical Trials -- 6: Phase IV Studies -- 17. Analysis of Health Economic Data -- 7: Manufacturing and Production -- 18. Evaluation of the Decimal Reduction Time
of a Sterilization Process in Pharmaceutical Production -- 19. Acceptance Sampling Plans by Attributes
ISBN:9781475734669
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Statistics , Bioinformatics , Computational biology , Statistics , Statistics for Life Sciences, Medicine, Health Sciences , Computer Appl. in Life Sciences
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Call number:SPRINGER-2001-9781475732474:ONLINE Show nearby items on shelf
Title:Statistical Methods in Bioinformatics An Introduction
Author(s): Warren J Ewens
Date:2001
Size:1 online resource (476 p.)
Note:10.1007/978-1-4757-3247-4
Contents:1 Probability Theory (i): One Random Variable -- 2 Probability Theory (ii): Many Random Variables -- 3 Statistics (i): An Introduction to Statistical Inference -- 4 Stochastic Processes (i): Poisson Processes and Markov Chains -- 5
The Analysis of One DNA Sequence -- 6 The Analysis of Multiple DNA or Protein Sequences -- 7 Stochastic Processes (ii): Random Walks -- 8 Statistics (ii): Classical Estimation and Hypothesis Testing -- 9 BLAST -- 10 Stochastic
Processes (iii): Markov Chains -- 11 Hidden Markov Models -- 12 Computationally Intensive Methods -- 13 Evolutionary Models -- 14 Phylogenetic Tree Estimation -- A Basic Notions in Biology -- B Mathematical Formulae and Results -- B.1
Numbers and Intervals -- B.2 Sets and Set Notation -- B.3 Factorials -- B.4 Binomial Coefficients -- B.5 The Binomial Theorem -- B.6 Permutations and Combinations -- B.7 Limits -- B.8 Asymptotics -- B.9 Stirling’s Approximation -- B.10
Entropy as Information -- B.11 Infinite Series -- B.12 Taylor Series -- B.13 Uniqueness of Taylor series -- B.14 Laurent Series -- B.15 Numerical Solutions of Equations -- B.16 Statistical Differentials -- B.17 The Gamma Function --
B.18 Proofs by Induction -- B.19 Linear Algebra and Matrices -- C Computational Aspects of the Binomial and Generalized Geometric Distribution Functions -- D BLAST: Sums of Normalized Scores -- References -- Author Index
ISBN:9781475732474
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Statistics , Bioinformatics , Computational biology , Statistics , Statistics for Life Sciences, Medicine, Health Sciences , Biomedicine general , Computer Appl. in Life Sciences
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Call number:SPRINGER-2001-9780387216065:ONLINE Show nearby items on shelf
Title:The Elements of Statistical Learning Data Mining, Inference, and Prediction
Author(s): Trevor Hastie
Date:2001
Size:1 online resource (536 p.)
Note:10.1007/978-0-387-21606-5
Contents:1 Introduction -- 2 Overview of Supervised Learning -- 3 Linear Methods for Regression -- 4 Linear Methods for Classification -- 5 Basis Expansions and Regularization -- 6 Kernel Methods -- 7 Model Assessment and Selection -- 8 Model
Inference and Averaging -- 9 Additive Models, Trees, and Related Methods -- 10 Boosting and Additive Trees -- 11 Neural Networks -- 12 Support Vector Machines and Flexible Discriminants -- 13 Prototype Methods and Nearest-Neighbors --
14 Unsupervised Learning -- References -- Author Index
ISBN:9780387216065
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Statistics , Mathematical statistics , Database management , Artificial intelligence , Bioinformatics , Computational biology , Statistics , Statistical Theory and Methods , Statistics for Engineering, Physics, Computer Science, Chemistry and Earth Scien , Probability and Statistics in Computer Science , Computer Appl. in Life Sciences , Database Management , Artificial Intelligence (incl. Robotics)
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Call number:SPRINGER-1997-9783540497332:ONLINE Show nearby items on shelf
Title:Physics of Biological Systems From Molecules to Species
Author(s):
Date:1997
Size:1 online resource (366 p.)
Note:10.1007/b13591
Contents:From the contents: Indroduction: Physics - and the Physics of Biological Systems -- DNA -- Proteins -- Motors, Membranes, Microtubules -- Neurons, Brains, and Sensory Signal Processing. Evolution, Micro- and Macro-Scale
ISBN:9783540497332
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Series:Lecture Notes in Physics: 480
Keywords: Physics , Chemistry, Physical and theoretical , Biochemistry , Bioinformatics , Computational biology , Biophysics , Biological physics , Physics , Biophysics and Biological Physics , Theoretical and Computational Chemistry , Biochemistry, general , Computer Appl. in Life Sciences
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Call number:SPRINGER-1995-9783642792908:ONLINE Show nearby items on shelf
Title:Modelling the Dynamics of Biological Systems Nonlinear Phenomena and Pattern Formation
Author(s):
Date:1995
Size:1 online resource (294 p.)
Note:10.1007/978-3-642-79290-8
Contents:I Pattern Formation in Chemical Systems -- Spiral Waves in Bounded Excitable Media -- Dynamics of Oscillatory Chemical Systems -- Localized Turing and Turing-Hopf Patterns -- II Biological Patterns -- Domains and Patterns in
Biological Membranes -- Modelling Pattern Formation on Primate Visual Cortex -- III Dynamics of Biological Macromolecules -- Channel Function and Channel-Lipid Bilayer Interactions -- Dynamics of Nucleic Acids and Nucleic Acid:Protein
Complexes -- IV Physiological Control Systems -- Models of Renal Blood Flow Autoregulation -- Dynamics of Bone Remodelling -- Modelling Heart Rate Variability Due to Respiration and Baroreflex -- A Dynamical Approach to Normal and
Parkinsonian Tremor -- V Complex Ecologies and Evolution -- Dynamics of Complex Ecologies -- A Self-Organized Critical Model for Evolution
ISBN:9783642792908
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Series:Springer Series in Synergetics: 65
Keywords: Physics , Bioinformatics , Computational biology , Biophysics , Biological physics , Physics , Biophysics and Biological Physics , Theoretical, Mathematical and Computational Physics , Computer Appl. in Life Sciences
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Call number:SPRINGER-1994-9783642468087:ONLINE Show nearby items on shelf
Title:Information Systems and Data Analysis Prospects — Foundations — Applications
Author(s):
Date:1994
Size:1 online resource (463 p.)
Note:10.1007/978-3-642-46808-7
Contents:I: Information Processing, Classification-Based Approaches, Linguistic and Conceptual Analysis -- Learning and Case-Based Reasoning -- Induction and Case-Based Reasoning for Classification Tasks -- Symbolic Learning and
Nearest-Neighbor Classification -- Nonstandard Concepts of Similarity in Case-Based Reasoning -- Learning from Cases for Classification Problem Solving -- Approaches Based on Linguistic Analysis -- Methods of Phoneticizing in Regard to
Spelling Variants of Medical Phrases -- Disambiguating Lexical Meaning: Conceptual meta-modelling as a means of controlling semantic language analysis -- Information Retrieval Using Conceptual Representations of Phrases -- Information
Processing and Design of Information Systems -- Communication in Distributed Heterogenous Systems -- Prerequisites and Development Perspectives for Information Processing in the Social Sciences -- Aspects of Coupling Logic Programming
and Databases -- Processing Scientific Networks in Bibliographic Databases -- Object-Oriented Systems Analysis Applied to the Method Component of a Knowledge-Based System for Data Analysis -- Classification Based Query Evaluation in
Knowledge Base Systems -- Uncertainity and Neural Networks -- Neural Networks: Architectures, Learning and Performance -- Reasoning with Uncertainty in Diagnostic Systems -- Conceptual Approaches -- Der klassische und der moderne
Begriff des Begriffs. Gedanken zur Geschichte der Begriffsbildung in den exakten Wissenschaften -- Ideas of Algebraic Concept Analysis -- Conceptual Structures in Mathematical Logic and Their Formal Representation -- II: Mathematical
and Statistical Methods for Classification and Data Analysis -- Clustering and Discrimination -- Three-Mode Hierarchical Cluster Analysis of Three-Way Three-Mode Data -- The Testing of Data Structures with Graph-Theoretical Models --
Geometric Approach to Evaluating Probabilities of Correct Classification into two Gaussian or Spherical Categories -- Jackknife Estimates of Similarity Coefficients Obtained from Quadrat Sampling of Species -- Clustering Techniques in
the Computing Environment XploRe -- On the Application of Discriminant Analysis in Medical Diagnostics -- Similarity Searching in Databases of Three-Dimensional Chemical Structures -- Feature Generation and Classification of Time
Series -- Data Analysis Methods -- TRIPAT: a Model for Analyzing Three-Mode Binary Data -- Block-relaxation Algorithms in Statistics -- Multidimensional Scaling with lp-Distances, a Unifying Approach -- Universal Optimality of Rank
Constrained Matrix Approximation -- The Analysis of Spatial Data from Marine Ecosystems -- Automatic Decomposition of Lattice Data including Missing Values and Boundaries -- III: Genome and Molecular Sequence Analysis -- Classification
and Data Analysis in Genome Projects: Some Aspects of Mapping, Alignment and Tree Reconstruction -- Multiple Alignment of Protein Sequences and Construction of Evolutionary Trees based on Amino Acid Properties — an Algebraic Approach
-- How to Deal With Third Codon Positions in Phylogenetic Analysis -- Machine Learning for Protein Structure Prediction -- A Parallel-Processor Implementation of an Algorithm to Delineate Distantly Related Protein Sequences using
Conserved Motifs and Neural Networks -- IV: Applied Data Analysis in Special Fields -- Economy and Marketing -- Knowledge-Based Selection and Application of Quantitative Models of Consumer Behavior -- Goodwill towards Domestic Products
as Segmentation Criterion: An Empirical Study within the Scope of Research on Country-of-Origin Effects -- Archeology -- Merovingian Glass Beads: An Essay of Classification -- Screening in Medicine -- Statistical Measures to Quantify
the Benefit from Screening: a Case Study on Cholesterol Screening -- Evaluation of Screening in Case-Control Studies: an Alternative to Randomized Controlled Trials? -- List of Authors
ISBN:9783642468087
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Health informatics , Computer science , Bioinformatics , Computational biology , Probabilities , Statistics , Economic theory , Economics , Economic Theory/Quantitative Economics/Mathematical Methods , Mathematics of Computing , Probability Theory and Stochastic Processes , Statistics for Business/Economics/Mathematical Finance/Insurance , Health Informatics , Computer Appl. in Life Sciences
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Call number:SPRINGER-1994-9783034885010:ONLINE Show nearby items on shelf
Title:Fractals in Biology and Medicine
Author(s):
Date:1994
Size:1 online resource (397 p.)
Note:10.1007/978-3-0348-8501-0
Contents:Preface: Summary of the Symposium -- The Significance of Fractals for Biology and Medicine. An Introduction and Summary -- Fractal Geometry and Biomedical Sciences7 -- A Fractal’s Lacunarity, and how it can be Tuned and Measured --
Spatial and Temporal Fractal Patterns in Cell and Molecular Biology -- Chaos, Noise and Biological Data -- Fractal Landscapes in Physiology & Medicine: Long-Range Correlations in DNA Sequences and Heart Rate Intervals -- Fractals in
Biological Design and Morphogenesis -- Design of Biological Organisms and Fractal Geometry -- Fractal and Non-Fractal Growth of Biological Cell Systems -- Evolutionary Meaning, Functions and Morphogenesis of Branching Structures in
Biology -- Relationship Between the Branching Pattern of Airways and the Spatial Arrangement of Pulmonary Acini — A Re-Examination from a Fractal Point of View -- Multivariate Characterization of Blood Vessel Morphogenesis in the Avian
Chorioallantoic Membrane (CAM): Cell Proliferation, Length Density and Fractal Dimension -- Phyllotaxis or Self-Similarity in Plant Morphogenesis -- Fractals in Molecular and Cell Biology -- Evolutionary Interplay Between Spontaneous
Mutation and Selection: Aleatoric Contributions of Molecular Reaction Mechanisms -- Error Propagation Theory of Chemically Solid Phase Synthesized Oligonucleotides and DNA Sequences for Biomedical Application -- Fractional Relaxation
Equations for Protein Dynamics -- Measuring Fractal Dimensions of Cell Contours: Practical Approaches and their Limitations -- Fractal Properties of Pericellular Membrane from Lymphocytes and Leukemic Cells -- Cellular Sociology:
Parametrization of Spatial Relationships Based on Voronoi Diagram and Ulam Trees -- A Fractal Analysis of Morphological Differentiation of Spinal Cord Neurons in Cell Culture -- Fractal Dimensions and Dendritic Branching of Neurons in
the Somatosensory Thalamus -- Fractal Structure and Metabolic Functions -- Organisms as Open Systems -- Transfer to and across Irregular Membranes Modelled by Fractal Geometry -- Scaling and Active Surface of Fractal Membranes --
Structure Formation in Excitable Media -- Colony Morphology of the Fungus Aspergillus Oryzae -- Estimation of the Correlation Dimension of All-Night Sleep EEG Data with a Personal Super Computer -- Fractals in Pathology -- Changes in
Fractal Dimension of Trabecular Bone in Osteoporosis: A Preliminary Study -- Use of the Fractal Dimension to Characterize the Structure of Cancellous Bone in Radiographs of the Proximal Femur -- Distribution of Local-Connected Fractal
Dimension and the Degree of Liver Fattiness from Ultrasound -- Fractal Dimension as a Characterisation Parameter of Premalignant and Malignant Epithelial Lesions of the Floor of the Mouth -- Modelling -- Modelling HIV/AIDS Dynamics --
Morphological Diagnosis Turns from Gestalt to Geometry -- Fluorescence Recovery after Photobleaching Studied by Total Internal Reflection Microscopy: An Experimental System for Studies on Living Cells in Culture -- Anomalous Diffusion
and Angle-Dependency in the Theory of Fluorescence Recovery after Photobleaching -- List of Speakers -- List of Participants
ISBN:9783034885010
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Life sciences , Health informatics , Bioinformatics , Computational biology , Biomathematics , Life Sciences , Computer Appl. in Life Sciences , Health Informatics , Mathematical and Computational Biology , Physiological, Cellular and Medical Topics
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Call number:SPRINGER-1993-9783642509742:ONLINE Show nearby items on shelf
Title:Information and Classification Concepts, Methods and Applications Proceedings of the 16th Annual Conference of the “Gesellschaft für Klassifikation e.V.” University of Dortmund, April 1–3, 1992
Author(s):
Date:1993
Size:1 online resource (517 p.)
Note:10.1007/978-3-642-50974-2
Contents:I: Data Analysis and Classification -- Classification Methods -- Hierarchical Clustering of Sampled Functions -- Spatial Clustering of Species Based on Quadrat Sampling -- A kn-Nearest Neighbour Algorithm for Unimodal Clusters --
Asymptotic Robustness in Cluster-Analysis for the Case of Tukey-Huber Distortions -- Choosing the Number of Component Clusters in the Mixture-Model Using a New Informational Complexity Criterion of the Inverse-Fisher Information Matrix
-- Fuzzy Classification -- Fuzzy Sets and Fuzzy Partitions -- Fuzzy Clustering by Minimizing the Total Hypervolume -- Conceptual Analysis -- Conceptual Data Systems -- Conceptual Clustering via Convex-Ordinal Structures -- Diagrams of
Similarity Lattices -- Approximate Galois Lattices of Formal Concepts -- Representation of Data by Pseudoline Arrangements -- Mathematical Characterizations -- A Relational Approach to Split Decomposition -- Some New Useful
Representations of Dissimilarities in Mathematical Classification -- Multidimensional Scaling -- A Comparison of Two Methods for Global Optimization in Multidimensional Scaling -- Directional Analysis of Three-Way Skew-Symmetric
Matrices -- Clustering in Low-Dimensional Space -- The Construction of Neighbour-Regions in Two Dimensions for Prediction with Multi-Level Categorical Variables -- Different Geometric Approaches to Correspondence Analysis of
Multivariate Data -- Nonlinear Biplots for Nonlinear Mappings -- Various Methods for Data Analysis -- Gradient Filtering Projections for Recovering Structures in Multivariate Data -- Classification with Set-Valued Decision Functions --
Canonical Discriminant Analysis: Comparison of Resampling Methods and Convex-Hull Approximation -- Nonparametric Prediction of Time Series on the Basis of Typical Course Patterns -- Moving Point Patterns: The Poisson Case -- II:
Information Retrieval, Knowledge Processing and Software -- Information Retrieval -- Representations, Models and Abstractions in Probabilistic Information Retrieval -- Fuzzy Graphs as a Basic Tool for Agglomerative Clustering and
Information Retrieval -- The Various Roles of Information Structures -- Neural Networks -- Classification Properties of Communicating Neural Networks -- Knowledge Extraction from Self-Organizing Neural Networks -- Self-Organizing
Neural Networks for Visualisation and Classification -- Expert Systems and Knowledge Processing -- HyDi: Integration of Hypermedia and Expert System Technology for Technical Diagnosis -- Classification and Learning of Similarity
Measures -- Context Sensitive Knowledge Processing -- An Efficient Application of a Rule-Based System -- Computational Linguistics -- Acquisition of Syntactical Knowledge from Text -- Generating Topic-Based Links in a Hypertext-System
for News -- Software -- Interactively Displaying Ultrametric and Additive Trees -- Anaglyphen 3D — A Program for the Interactive Representation of Three-Dimensional Perspective Plots of Statistical Data -- III: Applications and Special
Topics -- Sequence Data and Tree Reconstruction -- Discovering Consensus Molecular Sequences -- Alignment and Hierarchical Clustering Method for Strings -- More Reliable Phylogenies by Properly Weighted Nucleotide Substitutions --
Caminalcules and Didaktozoa: Imaginary Organisms as Test-Examples for Systematics -- Data Analysis and Informatics in Medicine -- Multivariate Analysis of the Process of Acclimation of Physiologic Variables -- Classification of EEG
Signals into General Stages of Anesthesia in Real-Time Using Autoregressive Models -- Automatic Segmentation and Classification of Multiparametric Image Data in Medicine -- Pseudoroots as Descriptors for a Thesaurus Based on Weidtman’s
Diagnosis Table of Pediatrics -- Special Topics - Thesauri, Archaeology, Musical Science and Psychometrics -- An Approach to a Space Related Thesaurus -- Classification of Archaeological Sands by Particle Size Analysis -- The Analysis
of Stratigraphic Data with Particular Reference to Zonation Problems -- Classification Criterion and the Universals in the Organization of a Musical Text -- A Two-Mode Clustering Study of Situations and Their Features
ISBN:9783642509742
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Health informatics , Bioinformatics , Computational biology , Probabilities , Statistics , Economic theory , Economics , Economic Theory/Quantitative Economics/Mathematical Methods , Probability Theory and Stochastic Processes , Statistics, general , Health Informatics , Computer Appl. in Life Sciences
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Call number:SPRINGER-1992-9783642766374:ONLINE Show nearby items on shelf
Title:Patterns in Protein Sequence and Structure
Author(s):
Date:1992
Size:1 online resource (262 p.)
Note:10.1007/978-3-642-76637-4
Contents:— Patterns, Predictions and Problems -- The Ultimate Rationale -- Protein Structure Prediction -- Motifs and Modelling -- Computational Techniques -- Current Problems in Pattern Matching -- Conclusions -- A Brief Review of Protein
Sequence Pattern Matching -- Pattern Matching Methods in the Prediction of Protein Structure and Function -- Consensus Methods -- Regular Expressions -- Specific Structural Patterns -- Recent Work -- Multiple Sequence Alignment and
Flexible Pattern Matching -- Background to Automatic Protein Sequence Alignment -- Multiple Sequence Alignment -- Flexible Pattern Matching -- Discussion -- SCRUTINEER: a Program to Explore and Evaluate Protein Sequence Patterns in
Databases -- Description of the Program -- New Features of SCRUTINEER -- A Sample Session -- Planned Enhancements -- Pattern Exploration and Evaluation -- Examples of Motif Development -- Current Issues -- Availability of SCRUTINEER --
Patterns and Specificity — Nucleotide Binding Proteins and Helicases -- Conservation Patterns -- Structural Sources of Patterns -- Nucleotide Binding Patterns -- Nucleotide Binding Pattern Specificity -- Helicases -- Conclusions --
Discussion -- The Helix-Turn-Helix Motif and the Cro Repressor -- Comparative Structural Studies -- Sequence Analysis and Motif Matching -- Predicted Motifs -- New Structural Studies -- Discussion -- Assignment of ?-Helices in Multiply
Aligned Protein Sequences — Applications to DNA Binding Motifs -- Usage of Hydrophobic Information in Helical Prediction -- Examples of Helical Prediction in DNA-Binding Domains -- Rules for Detection of Helices in Multiply Aligned
Sequences -- Assignment of ?-Strands -- Automation -- An Expert System for Secondary Structure Prediction -- Four Helix Bundles -- Secondary Structure Prediction -- Discussion -- Patterns in Secondary Structure Packing — a Database for
Prediction -- Topology, Packing and Geometry -- Parameter Selection -- Applications and Continuing Work -- Secondary and Supersecondary Motifs in Protein Structures -- Protein Structure Database Development -- Protein Structure
Hierarchy -- Analysis of ?-Turns -- Supersecondary Structures -- ?-Hairpin Classification -- Modelling ?-Hairpins -- ?-Arches -- Other Supersecondary Structures -- Conclusion -- Discussion -- A Review of Methods for Protein Structure
Comparison -- Methods Based on Comparison of Inter-Residue Distances -- Methods Comparing the Geometry of Fragments Along the Polypeptide Chain -- Methods Which Superpose Protein Structures or Fragments of Structure -- Methods Based On
the Geometry of Secondary Structures -- Methods Incorporating Dynamic Programming Techniques -- Conclusions -- Patterns of Sequence and 3-D Structure Variation in Families of Homologous Proteins: Lessons for Tertiary Templates and
Comparative Modelling -- X-Ray Analyses of Families of Proteins -- Rules Expressed as Environment-Specific Substitution Tables -- Rules for Generating Tertiary Templates -- Rules for Modelling Three-Dimensional Structure -- Discussion
-- Modelling From Remote Sequence Similarity — Enveloped Virus Capsid Structure Modelled on the Non-Enveloped Capsid -- Virus Structure -- 3D Electron Microcopy of Enveloped Capsids -- Comparative Sequence Analysis -- Structural Model
and Experimental Tests -- Conclusions -- Discussion -- Structural Motifs of the Extracellular Matrix Proteins Laminin and Tenascin -- Structural Organization of Laminin and Tenascin -- Sequence Arrangement of Laminin and Tenascin --
Sequence Motifs of Laminin and Tenascin -- Amino-Terminal Domains -- Cysteine-Rich Domains -- Heptad Repeats (?-Helical Coiled-Coils) -- Fibronectin Type III Repeats of Tenascin -- Homology of Sex Hormone Binding Globulin to C-Terminus
of Laminin A-Chain -- Fibrinogen Homology to C-Terminus of Tenascin -- “Molecular Modelling” by Motif Analysis and Electron Microscopy -- A Sequence Motif in the Transmembrane Region of Tyrosine Kinase Growth Factor Receptors -- Neu
Dimerisation -- Sequence Motif -- Conclusion -- Discussion
ISBN:9783642766374
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Series:Springer Series in Biophysics: 7
Keywords: Life sciences , Biotechnology , Chemoinformatics , Health informatics , Biochemistry , Bioinformatics , Computational biology , Biophysics , Biological physics , Life Sciences , Biochemistry, general , Biophysics and Biological Physics , Computer Appl. in Life Sciences , Biotechnology , Computer Applications in Chemistry , Health Informatics
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Call number:SPRINGER-1992-9783642764820:ONLINE Show nearby items on shelf
Title:Signal Transduction in Photoreceptor Cells Proceedings of an International Workshop Held at the Research Centre Jülich, Jülich, Fed. Rep. of Germany, 8–11 August 1990
Author(s):
Date:1992
Size:1 online resource (318 p.)
Note:10.1007/978-3-642-76482-0
Contents:Hermann Kühn — In Memoriam -- Plenary Lecture -- The Eyes of Halobacteria -- I Rhodopsin — Structure and Function -- Mutagenesis Studies of Rhodopsin Phototransduction -- Structural Stability of Rhodopsin and Opsin Studied by
Differential Scanning Calorimetry -- Molecular Analysis of Photoreceptor Protein Function -- Octopus Rhodopsin -- II Transducin and Phosphodiesterase -- The Activation of Transducin: Studies on its Mechanism and Modulation -- The
Transitory Complexes Between Photoexcited Rhodopsin and Transducin. Biochemical and Spectroscopic Studies -- The Rate of GTP Hydrolysis by Transducin and the Termination of the cGMP Cascade in Retinal Rods -- The Molecular Biology of
the Rod Photoreceptor cGMP Phosphodiesterase ?- and ?-Subunits -- III Deactivation Mechanisms -- The Phosphorylation of Rhodopsin -- Mechanisms of ?-Adrenergic Receptor Desensitization -- IV The cGMP-gated Channel -- Gating Kinetics of
the cGMP-Activated Conductance of Retinal Cones -- Molecular Properties of the cGMP-gated Cation Channel of Rod Photoreceptor Cells as Probed with Monoclonal Antibodies -- Cyclic Nucleotide-gated Channels — A Family of Proteins
Involved in Vertebrate Photoreception and Olfaction -- V Ca2+ Metabolism and Light Adaptation -- Interactions Between Calcium and cGMP in Dialyzed Detached Retinal Rod Outer Segments -- The Role of Cytoplasmic Calcium Concentration in
Photoreceptor Light Adaptation -- Photoreceptor Guanylate Cyclase and Its Regulation by Calcium -- VI Transduction in Invertebrates -- Cyclic-GMP Phosphodiesterase in Photoreceptor Cells in Limulus Ventral Eye -- The Molecular
Mechanism of Retinal Degeneration in the Retinal Degeneration B (rdgB) Mutant of Drosophila -- Glycosylation of Dipteran Opsins During Membrane Biogenesis -- Molecular Genetics of Visual Transduction in Drosophila -- Index of
Contributors
ISBN:9783642764820
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Keywords: Life sciences , Health informatics , Biochemistry , Cell biology , Bioinformatics , Computational biology , Zoology , Biophysics , Biological physics , Life Sciences , Zoology , Biochemistry, general , Biophysics and Biological Physics , Cell Biology , Health Informatics , Computer Appl. in Life Sciences
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Call number:SPRINGER-1992-9783642762147:ONLINE Show nearby items on shelf
Title:Introduction to Theoretical Population Genetics
Author(s): Thomas Nagylaki
Date:1992
Size:1 online resource (369 p.)
Note:10.1007/978-3-642-76214-7
Contents:1. Introduction -- 2. Asexual Haploid Populations -- 2.1 Selection -- 2.2 Mutation and Selection -- 2.3 Migration and Selection -- 2.4 Continuous Model with Overlapping Generations -- 2.5 Random Drift -- 2.6 Problems -- 3. Panmictic
Populations -- 3.1 The Hardy-Weinberg Law -- 3.2 X-Linkage -- 3.3 Two Loci -- 3.4 Population Subdivision -- 3.5 Genotypic Frequencies in a Finite Population -- 3.6 Problems -- 4. Selection at an Autosomal Locus -- 4.1 Formulation for
Multiple Alleles -- 4.2 Dynamics with Two Alleles -- 4.3 Dynamics with Multiple Alleles -- 4.4 Two Alleles with Inbreeding -- 4.5 Variable Environments -- 4.6 Intra-Family Selection -- 4.7 Maternal Inheritance -- 4.8 Meiotic Drive --
4.9 Mutation and Selection -- 4.10 Continuous Model with Overlapping Generations -- 4.11 Density and Frequency Dependence -- 4.12 Problems -- 5. Nonrandom Mating -- 5.1 Selfing with Selection -- 5.2 Assortative Mating with Multiple
Alleles and Distinguishable Genotypes -- 5.3 Assortative Mating with Two Alleles and Complete Dominance -- 5.4 Random Mating with Differential Fertility -- 5.5 Self-Incompatibility Alleles -- 5.6 Pollen and Zygote Elimination -- 5.7
Problems -- 6. Migration and Selection -- 6.1 The Island Model -- 6.2 General Analysis -- 6.3 The Levene Model -- 6.4 Two Diallelic Niches -- 6.5 Problems -- 7. X-Linkage -- 7.1 Formulation for Multiallelic Selection and Mutation --
7.2 Selection with Two Alleles -- 7.3 Mutation-Selection Balance -- 7.4 Weak Selection -- 7.5 Problems -- 8. Two Loci -- 8.1 General Formulation for Multiple Loci -- 8.2 Analysis for Two Multiallelic Loci -- 8.3 Two Diallelic Loci --
8.4 Continuous Model with Overlapping Generations -- 8.5 Problems -- 9. Inbreeding and Random Drift -- 9.1 The Inbreeding Coefficient -- 9.2 Calculation of the Inbreeding Coefficient from Pedigrees -- 9.3 Identity Relations Between
Relatives -- 9.4 Phenotypic Effects of Inbreeding -- 9.5 Regular Systems of Inbreeding -- 9.6 Panmixia in Finite Populations -- 9.7 Heterozygosity under Mutation and Random Drift -- 9.8 The Inbreeding Effective Population Number -- 9.9
The Model for Random Drift of Gene Frequencies -- 9.10 Random Drift of Gene Frequencies -- 9.11 Gene-Frequency Change due to Mutation and Random Drift -- 9.12 The Island Model -- 9.13 The Variance Effective Population Number -- 9.14
Problems -- 10. Quantitative Genetics -- 10.1 The Decomposition of the Variance with Panmixia -- 10.2 The Correlation Between Relatives with Panmixia -- 10.3 The Change in Variance due to Assortative Mating -- 10.4 The Correlation
Between Relatives with Assortative Mating -- 10.5 Selection -- 10.6 Mutation-Selection Balance -- 10.7 Problems -- References -- Author Index
ISBN:9783642762147
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Series:Biomathematics: 21
Keywords: Life sciences , Bioinformatics , Computational biology , Biomathematics , Life Sciences , Computer Appl. in Life Sciences , Mathematical and Computational Biology
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Call number:SPRINGER-1991-9783642762659:ONLINE Show nearby items on shelf
Title:Parallel Algorithms in Computational Science
Author(s):
Date:1991
Size:1 online resource (183 p.)
Note:10.1007/978-3-642-76265-9
Contents:1. Introduction -- 2. Computer Simulation Methods -- 2.1 Essential Features of Simulation Methods -- 2.2 The Monte Carlo Algorithm -- 2.3 Molecular Dynamics -- 2.4 Hybrid Molecular Dynamics -- 2.5 Accuracy Considerations and
Finite-Size Problems -- 2.6 Monte Carlo Algorithm for the Ising Model -- 3. Physics and Parallelism -- 4. Concepts of Parallelism -- 4.1 Some Basic Definitions -- 4.2 The Complexity of Computation -- 4.3 More on Models and Methods --
4.4 Performance Measurements -- 5. Parallel Machines and Languages -- 5.1 General Purpose Parallel Computers -- 5.2 Parallel Machines for Special Physics Problems -- 5.3 Languages for Parallel Computers -- 5.4 The Matching Problem --
6. Replication Algorithms -- 7. Geometrically Parallel Algorithms -- 7.1 Geometric Parallelization -- 7.2 Strips, Squares and Checker-Boards -- 7.3 Non-local and Cluster Algorithms -- 7.4 Parallel Molecular Dynamics Algorithms -- 7.5
Hybrid Molecular Dynamics -- 7.6 Polymers on the Lattice -- 7.7 Off-Lattice Polymers -- 7.8 Hybrid Molecular Dynamics for Polymers -- 7.9 Limits of Geometric Parallelization -- 8. Data Parallel Algorithms -- 8.1 Data Parallel Algorithm
for Long-Range Interactions -- 8.2 Polymers -- 9. Introduction to a Parallel Language -- 9.1 Transputer-Based Parallel Machines -- 9.2 Parallel Programming in Occam -- Appendices -- A. A Parallel Ising Model Program -- B. Random Number
Generator -- C. A Parallel Molecular Dynamics Program -- References
ISBN:9783642762659
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Series:Springer Series in Information Sciences: 24
Keywords: Physics , Chemistry, Physical and theoretical , Bioinformatics , Computational biology , Thermodynamics , Statistical physics , Dynamical systems , Physics , Mathematical Methods in Physics , Numerical and Computational Physics , Thermodynamics , Statistical Physics, Dynamical Systems and Complexity , Theoretical and Computational Chemistry , Computer Appl. in Life Sciences
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Call number:SPRINGER-1988-9783642517167:ONLINE Show nearby items on shelf
Title:Computer Simulation in Cell Radiobiology
Author(s): Andrej Yu Yakovlev
Date:1988
Size:1 online resource (133 p.)
Note:10.1007/978-3-642-51716-7
Contents:Simulation in Cell Populations Kinetics -- A Simulation Model for In Vitro Kinetics of Normal and Irradiated Cells -- Simulation and Analysis Op Radiobiological Effects in Cell Cultures -- Simulation of Controlled Cell Systems -- The
Properties of Cell Kinetics Indicators -- Conclusion
ISBN:9783642517167
Series:eBooks
Series:SpringerLink (Online service)
Series:Springer eBooks
Series:Lecture Notes in Biomathematics: 74
Keywords: Mathematics , Health informatics , Computer simulation , Bioinformatics , Computational biology , Biomathematics , Mathematics , Mathematical and Computational Biology , Simulation and Modeling , Health Informatics , Computer Appl. in Life Sciences
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